Research workbench
Structure of staphylococcus pseudintermedius metal-binding protein sita in complex with zinc
Analyse Structure of staphylococcus pseudintermedius metal-binding protein sita in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4OXQ
- Type
- protein
- Length
- 553 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Manganese ABC transporter, periplasmic-binding protein sita
- UniProt
- F0P9H5
- Ligands
- ZN
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Manganese ABC transporter, periplasmic-binding protein sita | protein | 278 | 44% helix, 16% strand | F0P9H5 |
| B | Manganese ABC transporter, periplasmic-binding protein sita | protein | 275 | 45% helix, 16% strand | F0P9H5 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1038 | 0.78 | 0.80 | 99 | empty |
| 2 | 97 | 0.38 | 0.75 | 14 | empty |
| 3 | 76 | 0.37 | 0.77 | 14 | empty |
| 4 | 60 | 0.32 | 0.76 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 821 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 4OXQ · Structure of Staphylococcus pseudintermedius metal-binding protein SitA in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F0P9H5
- Elsewhere: RCSB PDB 4OXQ · PDBe 4OXQ · UniProt F0P9H5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.