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Structure of prochlorococcus marinus str. mit 9313 CSOS1

Analyse Structure of prochlorococcus marinus str. mit 9313 CSOS1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4OX8
Type: protein
Length: 525 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Carbon dioxide-concentrating mechanism protein ccmk
UniProt: Q7V6F7
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Carbon dioxide-concentrating mechanism protein ccmk	protein	90	40% helix, 36% strand	Q7V6F7
B, C, D, E, F	Carbon dioxide-concentrating mechanism protein ccmk	protein	87	40% helix, 37% strand	Q7V6F7

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	93	0.32	0.73	23	empty

Interfaces

6 interfaces between chains.

C–D · 946 Å² buried · 10 hydrogen bonds · protein-protein
E–F · 934 Å² buried · 10 hydrogen bonds · protein-protein
B–F · 932 Å² buried · 10 hydrogen bonds · protein-protein
D–E · 929 Å² buried · 12 hydrogen bonds · protein-protein
A–C · 922 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

4OX8 · Structure of Prochlorococcus marinus str. MIT 9313 CsoS1 · the same entry in another collection · chain F against F, TM-score 1.00
Q7V6F7 · AlphaFold monomer V2.0 prediction for carboxysome shell protein CSOS1 (Q7V6F7) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7V6F7
Elsewhere: RCSB PDB 4OX8 · PDBe 4OX8 · UniProt Q7V6F7

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