Research workbench
Structural basis of SOSS1 in complex with a 12NT ssdna
Analyse Structural basis of SOSS1 in complex with a 12NT ssdna in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4OWX
- Type
- protein + DNA
- Length
- 580 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'); Integrator complex subunit 3; Soss complex…
- UniProt
- Q68E01, Q9BQ15
- Pockets
- 6 · best druggability 0.64
Structure
x-ray diffraction · 3 distinct chains · 57% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3') | dna | 9 | — | — |
| A | Integrator complex subunit 3 | protein | 464 | 69% helix, 1% strand | Q68E01 |
| B | Soss complex subunit B1 | protein | 107 | 7% helix, 56% strand | Q9BQ15 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 550 | 0.64 | 0.76 | 59 | empty |
| 2 | 155 | 0.48 | 0.77 | 29 | empty |
| 3 | 95 | 0.44 | 0.79 | 17 | empty |
| 4 | 60 | 0.36 | 0.78 | 12 | empty |
| 5 | 57 | 0.31 | 0.76 | 14 | empty |
Interfaces
2 interfaces between chains.
- A–B · 910 Ų buried · 10 hydrogen bonds · protein-protein
- L–B · 790 Ų buried · 12 hydrogen bonds · protein-nucleic
Compared structures
- 4OWX · Structural basis of SOSS1 in complex with a 12nt ssDNA · the same entry in another collection · chain L against L, TM-score 1.00
- Q68E01 · AlphaFold monomer V2.0 prediction for integrator complex subunit 3 (Q68E01) · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q9BQ15 · AlphaFold monomer V2.0 prediction for soss complex subunit B1 (Q9BQ15) · a predicted model of the same protein · chain B against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q68E01
- Every structure of UniProt Q9BQ15
- Elsewhere: RCSB PDB 4OWX · PDBe 4OWX · UniProt Q68E01 · UniProt Q9BQ15
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