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Crystal structure of a trap periplasmic solute binding protein from sulfurospirillum deleyianum dsm 6946 (SDEL_0447), target efi-510309, with bound succinate

Analyse Crystal structure of a trap periplasmic solute binding protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4OVS
Type: protein
Length: 620 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Trap dicarboxylate transporter, dctp subunit
UniProt: D1AZL7
Ligands: CL
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Trap dicarboxylate transporter, dctp subunit	protein	310	51% helix, 18% strand	D1AZL7

Ligands and binding sites

CL · Chloride ion · ion · chains A
SIN · Succinic acid · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.34	0.76	15	empty

Interfaces

1 interface between chains.

A–B · 308 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 20 modified (engineered).

Compared structures

4OVS · CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM SULFUROSPIRILLUM… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D1AZL7
Elsewhere: RCSB PDB 4OVS · PDBe 4OVS · UniProt D1AZL7

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