Research workbench

Crystal structure of periplasmic solute binding protein from veillonella parvula dsm 2008

Analyse Crystal structure of periplasmic solute binding protein from veillonella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4OVK
Type: protein
Length: 329 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Periplasmic binding protein
UniProt: D1BR49
Pockets: 3 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic binding protein	protein	329	43% helix, 15% strand	D1BR49

Ligands and binding sites

PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	152	0.49	0.78	25	empty
2	91	0.46	0.80	16	empty
3	67	0.32	0.75	16	empty

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

4OVK · Crystal structure of periplasmic solute binding protein from Veillonella parvula DSM 2008 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D1BR49
Elsewhere: RCSB PDB 4OVK · PDBe 4OVK · UniProt D1BR49

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.