Research workbench

Crystal structure of human caprin-2 C1Q domain

Analyse Crystal structure of human caprin-2 C1Q domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4OUM
Type: protein
Length: 132 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Caprin-2
UniProt: Q6IMN6

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Caprin-2	protein	132	0% helix, 57% strand	Q6IMN6

Ligands and binding sites

IPA · Isopropyl alcohol · additive · 3 copies · chains A
PG4 · Tetraethylene glycol · additive · chains A
FLC · Citrate anion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

4OUM · Crystal structure of human Caprin-2 C1q domain · the same entry in another collection · chain A against A, TM-score 1.00
Q6IMN6 · AlphaFold monomer V2.0 prediction for caprin-2 (Q6IMN6) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6IMN6
Elsewhere: RCSB PDB 4OUM · PDBe 4OUM · UniProt Q6IMN6

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.