Research workbench
Crystal structure of tal effector reveals the recognition between asparagine and adenine
Analyse Crystal structure of tal effector reveals the recognition between asparagine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4OSJ
- Type
- protein + DNA
- Length
- 1,040 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HAX3; DNA (5'- D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3'); DNA (5'…
- UniProt
- Q3ZD72
- Pockets
- 4 · best druggability 0.81
Structure
x-ray diffraction · 6 distinct chains · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HAX3 | protein | 487 | 68% helix, 0% strand | Q3ZD72 |
| I | DNA (5'- D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3') | dna | 16 | — | — |
| J | DNA (5'- D(*AP*GP*AP*GP*AP*GP*AP*TP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3') | dna | 16 | — | — |
| B | HAX3 | protein | 489 | 71% helix, 0% strand | Q3ZD72 |
| G | DNA (5'- D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3') | dna | 16 | — | — |
| H | DNA (5'- D(*AP*GP*AP*GP*AP*GP*AP*TP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3') | dna | 16 | — | — |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 823 | 0.81 | 0.84 | 92 | empty |
| 2 | 1187 | 0.78 | 0.81 | 97 | empty |
| 3 | 670 | 0.62 | 0.73 | 51 | empty |
| 4 | 206 | 0.53 | 0.78 | 29 | empty |
Interfaces
9 interfaces between chains.
- A–I · 1713 Ų buried · 21 hydrogen bonds · protein-nucleic
- B–G · 1706 Ų buried · 20 hydrogen bonds · protein-nucleic
- A–B · 710 Ų buried · 3 hydrogen bonds · protein-protein
- G–H · 696 Ų buried · 60 hydrogen bonds · nucleic-nucleic
- I–J · 693 Ų buried · 72 hydrogen bonds · nucleic-nucleic
Compared structures
- 4OSJ · Crystal structure of TAL effector reveals the recognition between asparagine and adenine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3ZD72
- Elsewhere: RCSB PDB 4OSJ · PDBe 4OSJ · UniProt Q3ZD72
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.