Research workbench
X-ray structure of H6N6-NS1 DELTA(80-84) mutant
Analyse X-ray structure of H6N6-NS1 DELTA(80-84) mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4OPA
- Type
- protein
- Length
- 390 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nonstructural protein 1
- UniProt
- Q20NS3
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Nonstructural protein 1 | protein | 197 | 46% helix, 25% strand | Q20NS3 |
| A | Nonstructural protein 1 | protein | 193 | 44% helix, 24% strand | Q20NS3 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 325 | 0.67 | 0.81 | 39 | empty |
| 2 | 490 | 0.64 | 0.76 | 44 | empty |
| 3 | 126 | 0.63 | 0.87 | 18 | empty |
Interfaces
1 interface between chains.
- B–A · 2110 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 4OPA · X-ray structure of H6N6-NS1 delta(80-84) mutant · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q20NS3
- Elsewhere: RCSB PDB 4OPA · PDBe 4OPA · UniProt Q20NS3
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