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X-ray crystal structure of the passenger domain of plasmid encoded toxin, an autrotansporter enterotoxin from enteroaggregative escherichia COLI (eaec)

Analyse X-ray crystal structure of the passenger domain of plasmid encoded toxin, an… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4OM9
Type: protein
Length: 930 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Serine protease pet
EC: 3.4.21.-
UniProt: O68900
Pockets: 8 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Serine protease pet (EC 3.4.21.-)	protein	930	6% helix, 36% strand	O68900

Pockets

8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	560	0.76	0.83	60	empty
2	478	0.73	0.82	72	empty
3	176	0.47	0.75	30	empty
4	73	0.46	0.82	15	empty
5	115	0.43	0.78	26	empty

Compared structures

4OM9 · X-Ray Crystal Structure of the passenger domain of Plasmid encoded toxin, an… · the same entry in another collection · chain A against A, TM-score 1.00
O68900 · AlphaFold monomer V2.0 prediction for serine protease pet autotransporter (O68900) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O68900
Elsewhere: RCSB PDB 4OM9 · PDBe 4OM9 · UniProt O68900

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