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Ligand-free structure of the grpu microcompartment shell protein from clostridiales bacterium 1_7_47FAA
Analyse Ligand-free structure of the grpu microcompartment shell protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4OLO
- Type
- protein
- Length
- 326 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bmc domain protein
- UniProt
- C5EE96
- Pockets
- 2 · best druggability 0.35
Structure
x-ray diffraction · 4 distinct chains · 44% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bmc domain protein | protein | 79 | 44% helix, 30% strand | C5EE96 |
| B | Bmc domain protein | protein | 84 | 42% helix, 29% strand | C5EE96 |
| C | Bmc domain protein | protein | 79 | 44% helix, 30% strand | C5EE96 |
| D | Bmc domain protein | protein | 84 | 45% helix, 29% strand | C5EE96 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.35 | 0.77 | 14 | empty |
| 2 | 55 | 0.31 | 0.76 | 13 | empty |
Interfaces
3 interfaces between chains.
- A–B · 756 Ų buried · 12 hydrogen bonds · protein-protein
- C–D · 745 Ų buried · 13 hydrogen bonds · protein-protein
- A–C · 462 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 4OLO · Ligand-free structure of the GrpU microcompartment shell protein from Clostridiales… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5EE96
- Elsewhere: RCSB PDB 4OLO · PDBe 4OLO · UniProt C5EE96
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