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Crystal structure of D(CCCCGGTACCGGGG)2 at 1.65 ångström

Analyse Crystal structure of D(CCCCGGTACCGGGG)2 at 1.65 ångström in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4OKL
Type: DNA
Length: 28 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 14 mer a-DNA
Pockets: 1 · best druggability 0.28

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	14 mer a-DNA	dna	14	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	92	0.28	0.71	16	empty

Interfaces

1 interface between chains.

A–B · 733 Å² buried · 79 hydrogen bonds · nucleic-nucleic

Compared structures

4OKL · Crystal Structure of d(CCCCGGTACCGGGG)2 at 1.65 Angstrom · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4OKL · PDBe 4OKL

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