Research workbench
Crystal structure of putative nucleotidyltransferase from H. pylori
Analyse Crystal structure of putative nucleotidyltransferase from H. pylori in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4OK0
- Type
- protein
- Length
- 452 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative
- UniProt
- Q9ZKK2
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative | protein | 225 | 50% helix, 19% strand | Q9ZKK2 |
| B | Putative | protein | 227 | 52% helix, 21% strand | Q9ZKK2 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 287 | 0.55 | 0.76 | 40 | empty |
| 2 | 268 | 0.51 | 0.75 | 38 | empty |
| 3 | 84 | 0.35 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 209 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4OK0 · Crystal structure of putative nucleotidyltransferase from H. pylori · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZKK2
- Elsewhere: RCSB PDB 4OK0 · PDBe 4OK0 · UniProt Q9ZKK2
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