Research workbench

Mbp-fusion protein of PILA1 residues 26-159

Analyse Mbp-fusion protein of PILA1 residues 26-159 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4OGM
Type: protein
Length: 500 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Maltose ABC transporter periplasmic protein, pilin protein chimera
UniProt: D8A942, A0A1R2EY47
Ligands: GLC
Pockets: 5 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Maltose ABC transporter periplasmic protein, pilin protein chimera	protein	500	41% helix, 23% strand	D8A942, A0A1R2EY47

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	260	0.71	0.86	31	GLC
2	246	0.49	0.74	38	empty
3	192	0.47	0.76	29	empty
4	71	0.34	0.76	17	empty
5	89	0.31	0.72	18	empty

Compared structures

4OGM · MBP-fusion protein of PilA1 residues 26-159 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D8A942
Every structure of UniProt A0A1R2EY47
Elsewhere: RCSB PDB 4OGM · PDBe 4OGM · UniProt D8A942 · UniProt A0A1R2EY47

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