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Structure of the S. venezulae bldd DNA-binding domain

Analyse Structure of the S. venezulae bldd DNA-binding domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4OB4
Type: protein
Length: 206 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative DNA-binding protein
UniProt: Q7AKQ8
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 2 distinct chains · 67% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Putative DNA-binding protein	protein	69	67% helix, 1% strand	Q7AKQ8
C	Putative DNA-binding protein	protein	68	68% helix, 1% strand	Q7AKQ8

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.31	0.76	17	empty

Interfaces

3 interfaces between chains.

A–C · 599 Å² buried · 3 hydrogen bonds · protein-protein
A–B · 255 Å² buried · 1 hydrogen bond · protein-protein
B–C · 213 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

4OB4 · Structure of the S. venezulae BldD DNA-binding domain · the same entry in another collection · chain C against C, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7AKQ8
Elsewhere: RCSB PDB 4OB4 · PDBe 4OB4 · UniProt Q7AKQ8

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