Research workbench
Crystal structure of chitinase D from serratia proteamaculans at 1.45 ångström resolution
Analyse Crystal structure of chitinase D from serratia proteamaculans at 1.45 ångström… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4NZC
- Type
- protein
- Length
- 398 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycoside hydrolase family 18
- EC
- 3.2.1.14
- UniProt
- A8GFD6
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycoside hydrolase family 18 (EC 3.2.1.14) | protein | 398 | 37% helix, 20% strand | A8GFD6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 284 | 0.66 | 0.82 | 36 | ACT, GOL |
| 2 | 92 | 0.42 | 0.78 | 22 | GOL |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
- 4NZC · Crystal structure of Chitinase D from Serratia proteamaculans at 1.45 Angstrom resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8GFD6
- Elsewhere: RCSB PDB 4NZC · PDBe 4NZC · UniProt A8GFD6
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