Research workbench
Crystal structure of T-cell lymphoma invasion and metastasis-1 PDZ domain quadruple mutant (qm) in complex with CASPR4 peptide
Analyse Crystal structure of T-cell lymphoma invasion and metastasis-1 PDZ domain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4NXQ
- Type
- protein
- Length
- 298 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- T-lymphoma invasion and metastasis-inducing protein 1; Contactin-associated protein-like…
- UniProt
- Q13009, Q9C0A0
Structure
x-ray diffraction · 4 distinct chains · 19% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | T-lymphoma invasion and metastasis-inducing protein 1 | protein | 91 | 21% helix, 44% strand | Q13009 |
| B, C | T-lymphoma invasion and metastasis-inducing protein 1 | protein | 94 | 20% helix, 43% strand | Q13009 |
| D | Contactin-associated protein-like 4 peptide | protein | 7 | 0% helix, 57% strand | Q9C0A0 |
| E, F | Contactin-associated protein-like 4 peptide | protein | 6 | 0% helix, 50% strand | Q9C0A0 |
Interfaces
7 interfaces between chains.
- A–C · 594 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 569 Ų buried · 8 hydrogen bonds · protein-protein
- A–D · 562 Ų buried · 13 hydrogen bonds · protein-protein
- C–F · 495 Ų buried · 12 hydrogen bonds · protein-protein
- B–E · 443 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 4NXQ · Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ Domain Quadruple… · the same entry in another collection · chain F against F, TM-score 1.00
- Q13009 · AlphaFold monomer V2.0 prediction for T-lymphoma invasion and metastasis-inducing protein… · a predicted model of the same protein · chain A against A, TM-score 0.92
- Q9C0A0 · AlphaFold monomer V2.0 prediction for contactin-associated protein- like 4 (Q9C0A0) · a predicted model of the same protein · chain E against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13009
- Every structure of UniProt Q9C0A0
- Elsewhere: RCSB PDB 4NXQ · PDBe 4NXQ · UniProt Q13009 · UniProt Q9C0A0
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