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Crystal structure of a lipoprotein, yaec family (EF3198) from enterococcus faecalis V583 at 1.80 a resolution

Analyse Crystal structure of a lipoprotein, yaec family (EF3198) from enterococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4NTL
Type: protein
Length: 242 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lipoprotein, yaec family
UniProt: Q82Z74
Ligands: ZN, NA
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lipoprotein, yaec family	protein	242	39% helix, 25% strand	Q82Z74

Ligands and binding sites

ZN · Zinc ion · metal · 5 copies · chains A
NA · Sodium ion · metal · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A
ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	342	0.63	0.78	43	EDO

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

4NTL · Crystal structure of a lipoprotein, YaeC family (EF3198) from Enterococcus faecalis V583… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt Q82Z74
Elsewhere: RCSB PDB 4NTL · PDBe 4NTL · UniProt Q82Z74

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