Research workbench

Crystal structure of the periplasmic alginate epimerase algg D317A mutant

Analyse Crystal structure of the periplasmic alginate epimerase algg D317A mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4NK8
Type: protein
Length: 424 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: POLY(BETA-D-mannuronate) C5 epimerase
EC: 5.1.3.-
UniProt: Q887Q3
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	POLY(BETA-D-mannuronate) C5 epimerase (EC 5.1.3.-)	protein	424	9% helix, 42% strand	Q887Q3

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	89	0.31	0.73	18	empty

Modifications

Observed in the structure: 7 modified (methylation).

Compared structures

4NK8 · Crystal Structure of the periplasmic alginate epimerase AlgG D317A mutant · the same entry in another collection · chain A against A, TM-score 1.00
Q887Q3 · AlphaFold monomer V2.0 prediction for mannuronan C5-epimerase (Q887Q3) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q887Q3
Elsewhere: RCSB PDB 4NK8 · PDBe 4NK8 · UniProt Q887Q3

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.