Research workbench
Multi-conformation crystal structure of GGM5CGM5CC
Analyse Multi-conformation crystal structure of GGM5CGM5CC in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1IH3
- Type
- DNA
- Length
- 48 nucleotides
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*GP*(5CM)P*GP*(5CM)P*C)-3'
- Pockets
- 1 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | 5'-D(*GP*GP*(5CM)P*GP*(5CM)P*C)-3' | dna | 6 | — | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.40 | 0.78 | 20 | empty |
Interfaces
15 interfaces between chains.
- E–F · 301 Ų buried · 30 hydrogen bonds · nucleic-nucleic
- C–D · 301 Ų buried · 29 hydrogen bonds · nucleic-nucleic
- A–B · 298 Ų buried · 29 hydrogen bonds · nucleic-nucleic
- G–H · 295 Ų buried · 29 hydrogen bonds · nucleic-nucleic
- A–D · 142 Ų buried · 2 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 16 modified (nucleotide modification).
Compared structures
- 1IH3 · Multi-conformation crystal structure of GGm5CGm5CC · the same entry in another collection · chain F against F, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1IH3 · PDBe 1IH3
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