Research workbench
The putative substrate binding domain of ABC-type transporter from agrobacterium tumefaciens in open conformation
Analyse The putative substrate binding domain of ABC-type transporter from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ND9
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ABC transporter, substrate binding protein (PROLINE/GLYCINE/BETAINE)
- UniProt
- A9CKK7
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ABC transporter, substrate binding protein (PROLINE/GLYCINE/BETAINE) | protein | 280 | 50% helix, 19% strand | A9CKK7 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 188 | 0.46 | 0.75 | 29 | empty |
| 2 | 87 | 0.39 | 0.77 | 21 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 4ND9 · The putative substrate binding domain of ABC-type transporter from Agrobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9CKK7
- Elsewhere: RCSB PDB 4ND9 · PDBe 4ND9 · UniProt A9CKK7
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