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Crystal structure of yeast hexokinase pii with the correct amino acid sequence

Analyse Crystal structure of yeast hexokinase pii with the correct amino acid sequence in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1IG8
Type: protein
Length: 469 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hexokinase pii
EC: 2.7.1.1
UniProt: P04807
Ligands: SO4
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hexokinase pii (EC 2.7.1.1)	protein	469	44% helix, 17% strand	P04807

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	537	0.63	0.75	61	SO4

Compared structures

1IG8 · Crystal Structure of Yeast Hexokinase PII with the correct amino acid sequence · the same entry in another collection · chain A against A, TM-score 1.00
P04807 · AlphaFold monomer V2.0 prediction for hexokinase-2 (P04807) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04807
Elsewhere: RCSB PDB 1IG8 · PDBe 1IG8 · UniProt P04807

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