Research workbench
Crystal structure of hypothetical protein XCC2798 from xanthomonas campestris, target efi-508608
Analyse Crystal structure of hypothetical protein XCC2798 from xanthomonas campestris… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4NAV
- Type
- protein
- Length
- 726 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein XCC279
- UniProt
- Q8P716
- Pockets
- 6 · best druggability 0.63
Structure
x-ray diffraction · 3 distinct chains · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D, C | Hypothetical protein XCC279 | protein | 182 | 41% helix, 17% strand | Q8P716 |
| A | Hypothetical protein XCC279 | protein | 181 | 41% helix, 15% strand | Q8P716 |
| B | Hypothetical protein XCC279 | protein | 181 | 41% helix, 16% strand | Q8P716 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 222 | 0.63 | 0.82 | 23 | empty |
| 2 | 260 | 0.62 | 0.81 | 31 | empty |
| 3 | 141 | 0.48 | 0.78 | 26 | empty |
| 4 | 113 | 0.41 | 0.77 | 20 | empty |
| 5 | 93 | 0.40 | 0.77 | 19 | empty |
Interfaces
3 interfaces between chains.
- D–C · 1234 Ų buried · 19 hydrogen bonds · protein-protein
- A–B · 1193 Ų buried · 15 hydrogen bonds · protein-protein
- D–B · 208 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4NAV · Crystal structure of hypothetical protein XCC2798 from Xanthomonas campestris, Target… · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8P716
- Elsewhere: RCSB PDB 4NAV · PDBe 4NAV · UniProt Q8P716
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