Research workbench
Structural basis of bama-mediate outer membrane protein biogenesis
Analyse Structural basis of bama-mediate outer membrane protein biogenesis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4N75
- Type
- protein
- Length
- 749 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane protein assembly factor bama
- UniProt
- P0A940
- Pockets
- 9 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane protein assembly factor bama | protein | 379 | 4% helix, 53% strand | P0A940 |
| B | Outer membrane protein assembly factor bama | protein | 370 | 4% helix, 56% strand | P0A940 |
Pockets
9 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1112 | 0.74 | 0.76 | 76 | empty |
| 2 | 59 | 0.72 | 0.98 | 27 | empty |
| 3 | 1021 | 0.71 | 0.76 | 97 | empty |
| 4 | 60 | 0.71 | 0.98 | 25 | empty |
| 5 | 674 | 0.67 | 0.76 | 55 | empty |
Interfaces
1 interface between chains.
- A–B · 240 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4N75 · Structural Basis of BamA-mediate Outer Membrane Protein Biogenesis · the same entry in another collection · chain A against A, TM-score 1.00
- P0A940 · AlphaFold monomer V2.0 prediction for outer membrane protein assembly factor bama (P0A940) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A940
- Elsewhere: RCSB PDB 4N75 · PDBe 4N75 · UniProt P0A940
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