Research workbench
Crystal structure of rabex-5CC and rabaptin-5C21 complex
Analyse Crystal structure of rabex-5CC and rabaptin-5C21 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4N3Y
- Type
- protein
- Length
- 201 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RAB5 GDP/GTP exchange factor; Rab GTPase-binding effector protein 1
- UniProt
- Q9UJ41, Q15276
Structure
x-ray diffraction · 2 distinct chains · 96% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RAB5 GDP/GTP exchange factor | protein | 35 | 91% helix, 0% strand | Q9UJ41 |
| B, C | Rab GTPase-binding effector protein 1 | protein | 83 | 98% helix, 0% strand | Q15276 |
Interfaces
3 interfaces between chains.
- B–C · 1795 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 815 Ų buried · 4 hydrogen bonds · protein-protein
- A–B · 709 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4N3Y · Crystal structure of Rabex-5CC and Rabaptin-5C21 complex · the same entry in another collection · chain A against A, TM-score 1.00
- Q15276 · AlphaFold monomer V2.0 prediction for rab GTPase-binding effector protein 1 (Q15276) · a predicted model of the same protein · chain B against A, TM-score 0.85
- Q9UJ41 · AlphaFold monomer V2.0 prediction for RAB5 GDP/GTP exchange factor (Q9UJ41) · a predicted model of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UJ41
- Every structure of UniProt Q15276
- Elsewhere: RCSB PDB 4N3Y · PDBe 4N3Y · UniProt Q9UJ41 · UniProt Q15276
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