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Revised structure of E. COLI ssb
Analyse Revised structure of E. COLI ssb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MZ9
- Type
- protein
- Length
- 456 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single-stranded DNA-binding protein
- UniProt
- P0AGE0
- Pockets
- 8 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Single-stranded DNA-binding protein | protein | 114 | 8% helix, 49% strand | P0AGE0 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 286 | 0.59 | 0.78 | 35 | empty |
| 2 | 283 | 0.58 | 0.78 | 32 | empty |
| 3 | 174 | 0.56 | 0.81 | 24 | empty |
| 4 | 206 | 0.56 | 0.79 | 28 | empty |
| 5 | 229 | 0.54 | 0.77 | 34 | empty |
Interfaces
6 interfaces between chains.
- A–B · 1365 Ų buried · 22 hydrogen bonds · protein-protein
- C–D · 1258 Ų buried · 21 hydrogen bonds · protein-protein
- B–D · 478 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 465 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 253 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AGE0
- Elsewhere: RCSB PDB 4MZ9 · PDBe 4MZ9 · UniProt P0AGE0
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