Research workbench
Crystal structure of the neisseria gonorrhoeae mtrd inner membrane multidrug efflux pump
Analyse Crystal structure of the neisseria gonorrhoeae mtrd inner membrane multidrug… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MT1
- Type
- protein
- Length
- 1,023 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Drug efflux protein
- UniProt
- D1E405
- Pockets
- 13 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Drug efflux protein | protein | 1023 | 51% helix, 18% strand | D1E405 |
Pockets
13 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 391 | 0.74 | 0.85 | 74 | empty |
| 2 | 624 | 0.73 | 0.80 | 81 | empty |
| 3 | 220 | 0.73 | 0.88 | 39 | empty |
| 4 | 246 | 0.68 | 0.84 | 45 | empty |
| 5 | 152 | 0.55 | 0.81 | 31 | empty |
Compared structures
- 4MT1 · Crystal Structure of the Neisseria gonorrhoeae MtrD Inner Membrane Multidrug Efflux Pump · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1E405
- Elsewhere: RCSB PDB 4MT1 · PDBe 4MT1 · UniProt D1E405
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