Research workbench
Crystal structure of archaeoglobus fulgidus ipct-dipps bifunctional membrane protein
Analyse Crystal structure of archaeoglobus fulgidus ipct-dipps bifunctional membrane… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MND
- Type
- protein
- Length
- 408 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CTP L-myo-inositol-1-phosphate CYTIDYLYLTRANSFERASE/CDP-L- myo-inositol…
- EC
- 2.7.7.74, 2.7.8.34
- UniProt
- O29976
- Ligands
- LFA, MG
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CTP L-myo-inositol-1-phosphate CYTIDYLYLTRANSFERASE/CDP-L- myo-inositol myo-inositolphosphotransferase (EC 2.7.7.74, 2.7.8.34) | protein | 408 | 55% helix, 16% strand | O29976 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 610 | 0.68 | 0.78 | 56 | empty |
| 2 | 240 | 0.55 | 0.77 | 37 | empty |
| 3 | 73 | 0.42 | 0.80 | 14 | empty |
Compared structures
- 4MND · Crystal structure of Archaeoglobus fulgidus IPCT-DIPPS bifunctional membrane protein · the same entry in another collection · chain A against A, TM-score 1.00
- O29976 · AlphaFold monomer V2.0 prediction for bifunctional ipc transferase and dipp synthase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O29976
- Elsewhere: RCSB PDB 4MND · PDBe 4MND · UniProt O29976
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