Research workbench
Crystal structure of a VirB8 Type IV secretion system machinery soluble domain from Bartonella tribocorum
Analyse Crystal structure of a VirB8 Type IV secretion system machinery soluble domain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MEI
- Type
- protein
- Length
- 136 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.85
- Source
- Bartonella tribocorum
- Molecule
- VirB8 protein
- UniProt
- A9IWN6
- Pockets
- 2 · best druggability 0.35
Structure
x-ray diffraction · resolution 2.85 · 1 distinct chain · 32% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VirB8 protein | protein | 136 | 32% helix, 36% strand | A9IWN6 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.35 | 0.76 | 17 | empty |
| 2 | 53 | 0.31 | 0.77 | 15 | empty |
Compared structures
- 4MEI · Crystal structure of a VIRB8 type IV secretion system machinery soluble domain from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9IWN6
- Elsewhere: RCSB PDB 4MEI · PDBe 4MEI · UniProt A9IWN6
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