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Crystal structure of Thermus thermophilus CarD
Analyse Crystal structure of Thermus thermophilus CarD in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4L5G
- Type
- protein
- Length
- 323 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.3902
- Source
- Thermus thermophilus
- Molecule
- CarD
- UniProt
- Q5SLX5
- Pockets
- 3 · best druggability 0.48
Structure
x-ray diffraction · resolution 2.3902 · 2 distinct chains · 51% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CarD | protein | 162 | 50% helix, 20% strand | Q5SLX5 |
| B | CarD | protein | 161 | 52% helix, 17% strand | Q5SLX5 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.48 | 0.79 | 28 | empty |
| 2 | 54 | 0.32 | 0.77 | 10 | empty |
| 3 | 50 | 0.23 | 0.72 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1024 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 4L5G · Crystal structure of thermus thermophilus card · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SLX5
- Elsewhere: RCSB PDB 4L5G · PDBe 4L5G · UniProt Q5SLX5
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