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Crystal structure of glyceraldehyde-3-phosphate dehydrogenase 3 from Saccharomyces cerevisiae

Analyse Crystal structure of glyceraldehyde-3-phosphate dehydrogenase 3 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4IQ8
Type: protein
Length: 331 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.49
Source: Saccharomyces cerevisiae
Molecule: Glyceraldehyde-3-phosphate dehydrogenase 3
EC: 1.2.1.12
UniProt: P00359
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · resolution 2.49 · 1 distinct chain · 29% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glyceraldehyde-3-phosphate dehydrogenase 3 (EC 1.2.1.12)	protein	331	29% helix, 27% strand	P00359

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	393	0.58	0.75	36	empty

Compared structures

4IQ8 · Crystal structure of glyceraldehyde-3-phosphate dehydrogenase 3 from saccharomyces… · the same entry in another collection · chain A against A, TM-score 1.00
P00359 · AlphaFold monomer V2.0 prediction for glyceraldehyde-3-phosphate dehydrogenase 3 (P00359) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

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Every structure of UniProt P00359
Elsewhere: RCSB PDB 4IQ8 · PDBe 4IQ8 · UniProt P00359

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