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Crystal structure of glutathione transferase homolog from drosophilia mojavensis, TARGET EFI-501819, with bound glutathione
Analyse Crystal structure of glutathione transferase homolog from drosophilia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4HI7
- Type
- protein
- Length
- 439 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.25
- Source
- Drosophila mojavensis
- Molecule
- GI20122
- UniProt
- B4KM86
- Ligands
- GSH
- Pockets
- 6 · best druggability 0.79
Structure
x-ray diffraction · resolution 1.25 · 2 distinct chains · 56% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GI20122 | protein | 220 | 55% helix, 11% strand | B4KM86 |
| B | GI20122 | protein | 219 | 56% helix, 9% strand | B4KM86 |
Ligands and binding sites
- GSH · Glutathione · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 822 | 0.79 | 0.82 | 67 | GSH |
| 2 | 495 | 0.79 | 0.86 | 41 | GSH |
| 3 | 179 | 0.52 | 0.78 | 31 | empty |
| 4 | 152 | 0.47 | 0.77 | 32 | empty |
| 5 | 62 | 0.29 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1332 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 4HI7 · Crystal structure of glutathione transferase homolog from drosophilia mojavensis, target… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4KM86
- Elsewhere: RCSB PDB 4HI7 · PDBe 4HI7 · UniProt B4KM86
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