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Structure of Patellamide maturation protease PatG

Analyse Structure of Patellamide maturation protease PatG in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4H6X
Type: protein
Length: 605 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2
Source: Prochloron didemni
Molecule: Thiazoline oxidase/subtilisin-like protease
UniProt: Q52QJ1
Pockets: 7 · best druggability 0.53

Structure

x-ray diffraction · resolution 2 · 2 distinct chains · 40% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thiazoline oxidase/subtilisin-like protease	protein	289	40% helix, 15% strand	Q52QJ1
B	Thiazoline oxidase/subtilisin-like protease	protein	316	39% helix, 15% strand	Q52QJ1

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	335	0.53	0.74	37	empty
2	88	0.39	0.77	23	empty
3	65	0.37	0.78	15	empty
4	90	0.35	0.74	16	empty
5	77	0.35	0.76	24	empty

Interfaces

1 interface between chains.

A–B · 582 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

4H6X · Structure of patellamide maturation protease patg · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q52QJ1
Elsewhere: RCSB PDB 4H6X · PDBe 4H6X · UniProt Q52QJ1

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