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Crystal Structure HP-NAP from strain YS29 in apo form

Analyse Crystal Structure HP-NAP from strain YS29 in apo form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4EVE
Type: protein
Length: 144 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.1
Source: Helicobacter pylori
Molecule: Neutrophil-activating protein
UniProt: G1UIZ2
Ligands: SO4
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · resolution 2.1 · 1 distinct chain · 78% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Neutrophil-activating protein	protein	144	78% helix, 0% strand	G1UIZ2

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.35	0.74	13	empty

Compared structures

4EVE · Crystal structure hp-nap from strain YS29 in apo form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G1UIZ2
Elsewhere: RCSB PDB 4EVE · PDBe 4EVE · UniProt G1UIZ2

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