Research workbench
Crystal Structure of the periplasmic domain of the chimeric LPS O-antigen chain length regulator protein
Analyse Crystal Structure of the periplasmic domain of the chimeric LPS O-antigen chain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4E2C
- Type
- protein
- Length
- 465 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.8
- Source
- Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720); Shigella flexneri
- Molecule
- chimeric WzzB Chain length determinant protein
- UniProt
- P37792, Q04866
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · resolution 2.8 · 2 distinct chains · 60% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | chimeric WzzB Chain length determinant protein | protein | 233 | 59% helix, 11% strand | P37792, Q04866 |
| B | chimeric WzzB Chain length determinant protein | protein | 232 | 61% helix, 11% strand | P37792, Q04866 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 595 | 0.68 | 0.77 | 60 | empty |
| 2 | 306 | 0.67 | 0.82 | 37 | empty |
| 3 | 76 | 0.35 | 0.76 | 13 | empty |
| 4 | 52 | 0.26 | 0.74 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 2030 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 4E2C · Crystal structure of the periplasmic domain of the chimeric lps O- antigen chain length… · the same entry in another collection · chain A against A, TM-score 1.00
- P37792 · AlphaFold monomer V2.0 prediction for chain length determinant protein (P37792) · a predicted model of the same protein · chain B against A, TM-score 0.98
- Q04866 · AlphaFold monomer V2.0 prediction for chain length determinant protein (Q04866) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37792
- Every structure of UniProt Q04866
- Elsewhere: RCSB PDB 4E2C · PDBe 4E2C · UniProt P37792 · UniProt Q04866
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