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Tyrosine kinase AS - a common ancestor of Src and Abl bound to Gleevec

Analyse Tyrosine kinase AS - a common ancestor of Src and Abl bound to Gleevec in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4CSV
Type: protein
Length: 244 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.05
Source: SYNTHETIC CONSTRUCT
Molecule: Src-abl tyrosine kinase ancestor
EC: 2.7.10.2
Ligands: STI
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · resolution 2.05 · 1 distinct chain · 41% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Src-abl tyrosine kinase ancestor (EC 2.7.10.2)	protein	244	41% helix, 16% strand	—

Ligands and binding sites

STI · 4-(4-methyl-piperazin-1-ylmethyl)-N-[4-methyl-3-(4-pyridin-3-yl-pyrimidin-2-ylamino)-phenyl]-benzamide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	467	0.70	0.80	47	STI

Compared structures

4CSV · Tyrosine kinase as - a common ancestor of src and abl bound to gleevec · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4CSV · PDBe 4CSV

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