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Coordinates of the bacteriophage phi6 capsid subunits fitted into the cryoEM map EMD-1206

Analyse Coordinates of the bacteriophage phi6 capsid subunits fitted into the cryoEM… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4BTQ
Type: protein
Length: 1,522 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 7.5
Source: PSEUDOMONAS PHAGE PHI6
Molecule: Major inner protein P1
UniProt: P11126
Pockets: 14 · best druggability 0.60

Structure

electron microscopy · resolution 7.5 · 1 distinct chain · 44% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Major inner protein P1	protein	761	44% helix, 10% strand	P11126

Pockets

14 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	663	0.60	0.73	89	empty
2	457	0.55	0.73	73	empty
3	237	0.43	0.72	40	empty
4	223	0.41	0.72	49	empty
5	197	0.40	0.72	41	empty

Interfaces

1 interface between chains.

A–B · 106 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

4BTQ · Coordinates of the bacteriophage PHI6 capsid subunits fitted into the cryoem MAP emd-1206 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11126
Elsewhere: RCSB PDB 4BTQ · PDBe 4BTQ · UniProt P11126

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