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Coordinates of the bacteriophage phi6 capsid subunits (P1A and P1B) fitted into the cryoEM reconstruction of the procapsid at 4.4 A resolution

Analyse Coordinates of the bacteriophage phi6 capsid subunits (P1A and P1B) fitted into… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4BTG
Type: protein
Length: 1,522 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 4.4
Source: PSEUDOMONAS PHAGE PHI6
Molecule: Major inner protein P1
UniProt: P11126
Pockets: 20 · best druggability 0.90

Structure

electron microscopy · resolution 4.4 · 1 distinct chain · 39% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Major inner protein P1	protein	761	39% helix, 2% strand	P11126

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1134	0.90	0.92	180	empty
2	952	0.87	0.88	121	empty
3	179	0.81	0.96	35	empty
4	212	0.78	0.92	48	empty
5	127	0.75	0.94	33	empty

Interfaces

1 interface between chains.

A–B · 1034 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

4BTG · Coordinates of the bacteriophage PHI6 capsid subunits (P1A and P1B) fitted into the… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11126
Elsewhere: RCSB PDB 4BTG · PDBe 4BTG · UniProt P11126

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