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The structure of a fungal endo-beta-N-acetylglucosaminidase from glycosyl hydrolase family 18, at 1.3A resolution
Analyse The structure of a fungal endo-beta-N-acetylglucosaminidase from glycosyl… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4AC1
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.3
- Source
- HYPOCREA JECORINA
- Molecule
- Endo-N-acetyl-beta-D-glucosaminidase
- EC
- 3.2.1.96
- UniProt
- C4RA89
- Ligands
- NAG, ZN
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · resolution 1.3 · 1 distinct chain · 36% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Endo-N-acetyl-beta-D-glucosaminidase (EC 3.2.1.96) | protein | 283 | 36% helix, 19% strand | C4RA89 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains X
- ZN · Zinc ion · metal · 8 copies · chains X
- ACT · Acetate ion · additive · 3 copies · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.36 | 0.75 | 30 | ACT, ZN |
Modifications
Observed in the structure: 2 glycan (N-glycosylation).
Compared structures
- 4AC1 · The structure of a fungal endo-beta-N-acetylglucosaminidase from glycosyl hydrolase… · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4RA89
- Elsewhere: RCSB PDB 4AC1 · PDBe 4AC1 · UniProt C4RA89
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