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Structure of full-length duck RIG-I

Analyse Structure of full-length duck RIG-I in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4A2W
Type: protein
Length: 1,352 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 3.7
Source: ANAS PLATYRHYNCHOS
Molecule: Retinoic acid inducible protein I
UniProt: D3TI84
Pockets: 15 · best druggability 0.81

Structure

x-ray diffraction · resolution 3.7 · 2 distinct chains · 58% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Retinoic acid inducible protein I	protein	678	58% helix, 8% strand	D3TI84
B	Retinoic acid inducible protein I	protein	674	59% helix, 8% strand	D3TI84

Pockets

15 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1101	0.81	0.82	95	empty
2	712	0.68	0.76	59	empty
3	481	0.68	0.79	57	empty
4	568	0.66	0.76	52	empty
5	374	0.61	0.77	42	empty

Interfaces

1 interface between chains.

A–B · 1040 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

4A2W · Structure of full-length duck rig-I · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D3TI84
Elsewhere: RCSB PDB 4A2W · PDBe 4A2W · UniProt D3TI84

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