Research workbench
Crystal structure of the Loop 7 mutant PorB from Neisseria meningitidis serogroup B
Analyse Crystal structure of the Loop 7 mutant PorB from Neisseria meningitidis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WI5
- Type
- protein
- Length
- 312 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.4
- Source
- Neisseria meningitidis
- Molecule
- Major outer membrane protein P.IB
- UniProt
- P30690
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · resolution 2.4 · 1 distinct chain · 2% helix, 63% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Major outer membrane protein P.IB | protein | 312 | 2% helix, 63% strand | P30690 |
Ligands and binding sites
- FLC · Citrate anion · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 347 | 0.69 | 0.82 | 48 | empty |
| 2 | 494 | 0.58 | 0.74 | 54 | FLC |
| 3 | 65 | 0.31 | 0.75 | 20 | empty |
Compared structures
- 3WI5 · Crystal structure of the loop 7 mutant porb from neisseria meningitidis serogroup B · the same entry in another collection · chain A against A, TM-score 1.00
- P30690 · AlphaFold monomer V2.0 prediction for major outer membrane protein P.IB (P30690) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30690
- Elsewhere: RCSB PDB 3WI5 · PDBe 3WI5 · UniProt P30690
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