Research workbench
Structure of E. coli YajR transporter
Analyse Structure of E. coli YajR transporter in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WDO
- Type
- protein
- Length
- 453 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.15
- Source
- Escherichia coli
- Molecule
- MFS Transporter
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · resolution 3.15 · 1 distinct chain · 74% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MFS Transporter | protein | 453 | 74% helix, 4% strand | — |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 555 | 0.75 | 0.82 | 48 | empty |
| 2 | 414 | 0.61 | 0.76 | 47 | empty |
| 3 | 76 | 0.33 | 0.74 | 14 | empty |
| 4 | 50 | 0.25 | 0.73 | 11 | empty |
Compared structures
- 3WDO · Structure of E. COLI yajr transporter · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3WDO · PDBe 3WDO
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