Research workbench
Periplasmic domain of Vibrio parahaemolyticus CpxA
Analyse Periplasmic domain of Vibrio parahaemolyticus CpxA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3V67
- Type
- protein
- Length
- 263 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.3
- Source
- Vibrio parahaemolyticus
- Molecule
- Sensor protein CpxA
- EC
- 2.7.13.3
- UniProt
- Q87KW6
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · resolution 2.3 · 2 distinct chains · 30% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sensor protein CpxA (EC 2.7.13.3) | protein | 132 | 30% helix, 27% strand | Q87KW6 |
| B | Sensor protein CpxA (EC 2.7.13.3) | protein | 131 | 31% helix, 27% strand | Q87KW6 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 451 | 0.78 | 0.86 | 56 | empty |
| 2 | 68 | 0.64 | 0.92 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1322 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3V67 · Periplasmic domain of vibrio parahaemolyticus cpxa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87KW6
- Elsewhere: RCSB PDB 3V67 · PDBe 3V67 · UniProt Q87KW6
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