Research workbench
Structure of pB intermediate of Photoactive yellow protein (PYP) at pH 7
Analyse Structure of pB intermediate of Photoactive yellow protein (PYP) at pH 7 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3UME
- Type
- protein
- Length
- 125 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.8
- Source
- Halorhodospira halophila
- Molecule
- Photoactive yellow protein
- UniProt
- P16113
- Ligands
- HC4
Structure
x-ray diffraction · resolution 1.8 · 1 distinct chain · 28% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photoactive yellow protein | protein | 125 | 28% helix, 30% strand | P16113 |
Ligands and binding sites
- HC4 · 4'-hydroxycinnamic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 3UME · Structure of pb intermediate of photoactive yellow protein (pyp) at pH 7 · the same entry in another collection · chain A against A, TM-score 1.00
- P16113 · AlphaFold monomer V2.0 prediction for photoactive yellow protein (P16113) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16113
- Elsewhere: RCSB PDB 3UME · PDBe 3UME · UniProt P16113
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