Research workbench

Human mitochondrial single-stranded DNA binding protein

Analyse Human mitochondrial single-stranded DNA binding protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3ULL
Type: protein
Length: 209 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.4
Source: Homo sapiens
Molecule: DNA binding protein
UniProt: Q04837
Pockets: 2 · best druggability 0.46

Structure

x-ray diffraction · resolution 2.4 · 2 distinct chains · 8% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA binding protein	protein	106	8% helix, 55% strand	Q04837
B	DNA binding protein	protein	103	8% helix, 52% strand	Q04837

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	209	0.46	0.74	35	empty
2	67	0.29	0.74	18	empty

Interfaces

1 interface between chains.

A–B · 1464 Å² buried · 34 hydrogen bonds · protein-protein

Compared structures

3ULL · Human mitochondrial single-stranded DNA binding protein · the same entry in another collection · chain A against A, TM-score 1.00
Q04837 · AlphaFold monomer V2.0 prediction for single-stranded DNA-binding protein, mitochondrial… · a predicted model of the same protein · chain B against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04837
Elsewhere: RCSB PDB 3ULL · PDBe 3ULL · UniProt Q04837

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