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Crystal structure of nectin-1

Analyse Crystal structure of nectin-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3U83
Type: protein
Length: 300 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.499
Source: Homo sapiens
Molecule: Poliovirus receptor-related protein 1
UniProt: Q15223

Structure

x-ray diffraction · resolution 2.499 · 1 distinct chain · 3% helix, 60% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Poliovirus receptor-related protein 1	protein	300	3% helix, 60% strand	Q15223

Ligands and binding sites

PG6 · 1-(2-methoxy-ethoxy)-2-{2-[2-(2-methoxy-ethoxy]-ethoxy}-ethane · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

3U83 · Crystal structure of nectin-1 · the same entry in another collection · chain A against A, TM-score 1.00
Q15223 · AlphaFold monomer V2.0 prediction for nectin-1 (Q15223) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q15223
Elsewhere: RCSB PDB 3U83 · PDBe 3U83 · UniProt Q15223

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