Research workbench
Structure of ygeW encoded protein from E. coli
Analyse Structure of ygeW encoded protein from E. coli in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3Q98
- Type
- protein
- Length
- 381 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.001
- Source
- Escherichia coli
- Molecule
- transcarbamylase
- UniProt
- Q1R7G1
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · resolution 2.001 · 1 distinct chain · 51% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | transcarbamylase | protein | 381 | 51% helix, 14% strand | Q1R7G1 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 334 | 0.61 | 0.78 | 38 | empty |
| 2 | 77 | 0.43 | 0.80 | 18 | empty |
| 3 | 51 | 0.27 | 0.74 | 13 | empty |
Modifications
Observed in the structure: 15 modified (engineered).
Compared structures
- 3Q98 · Structure of ygew encoded protein from E. COLI · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1R7G1
- Elsewhere: RCSB PDB 3Q98 · PDBe 3Q98 · UniProt Q1R7G1
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