Research workbench
Crystal structure of a novel type of odorant binding protein from Anopheles gambiae belonging to the c+ class
Analyse Crystal structure of a novel type of odorant binding protein from Anopheles… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PM2
- Type
- protein
- Length
- 173 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.8
- Source
- Anopheles gambiae
- Molecule
- Odorant binding protein (AGAP007287-PA)
- UniProt
- Q7PF80
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · resolution 1.8 · 1 distinct chain · 58% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Odorant binding protein (AGAP007287-PA) | protein | 173 | 58% helix, 2% strand | Q7PF80 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 711 | 0.75 | 0.80 | 64 | empty |
| 2 | 61 | 0.33 | 0.76 | 12 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 3PM2 · Crystal structure of a novel type of odorant binding protein from anopheles gambiae… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7PF80
- Elsewhere: RCSB PDB 3PM2 · PDBe 3PM2 · UniProt Q7PF80
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