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Crystal Structure of GBS52, the minor pilin in gram-positive pathogen Streptococcus agalactiae

Analyse Crystal Structure of GBS52, the minor pilin in gram-positive pathogen… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3PHS
Type: protein
Length: 238 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.8
Source: Streptococcus agalactiae
Molecule: Cell wall surface anchor family protein
UniProt: Q8E0S8
Pockets: 2 · best druggability 0.58

Structure

x-ray diffraction · resolution 1.8 · 1 distinct chain · 7% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cell wall surface anchor family protein	protein	238	7% helix, 50% strand	Q8E0S8

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	352	0.58	0.76	44	empty
2	66	0.41	0.80	18	empty

Modifications

Observed in the structure: 1 isopeptide (isopeptide).

Compared structures

3PHS · Crystal structure of GBS52, the minor pilin in gram-positive pathogen streptococcus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8E0S8
Elsewhere: RCSB PDB 3PHS · PDBe 3PHS · UniProt Q8E0S8

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