Research workbench
Structure of the class C acid phosphatase from Pasteurella multocida
Analyse Structure of the class C acid phosphatase from Pasteurella multocida in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PCT
- Type
- protein
- Length
- 754 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.85
- Source
- Pasteurella multocida
- Molecule
- Class C acid phosphatase
- EC
- 3.1.3.2
- UniProt
- B9VWB2
- Pockets
- 9 · best druggability 0.74
Structure
x-ray diffraction · resolution 1.85 · 3 distinct chains · 51% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Class C acid phosphatase (EC 3.1.3.2) | protein | 246 | 51% helix, 14% strand | B9VWB2 |
| B | Class C acid phosphatase (EC 3.1.3.2) | protein | 253 | 50% helix, 14% strand | B9VWB2 |
| C | Class C acid phosphatase (EC 3.1.3.2) | protein | 255 | 51% helix, 14% strand | B9VWB2 |
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 499 | 0.74 | 0.82 | 56 | empty |
| 2 | 500 | 0.71 | 0.80 | 51 | empty |
| 3 | 155 | 0.69 | 0.89 | 33 | empty |
| 4 | 188 | 0.64 | 0.85 | 28 | empty |
| 5 | 114 | 0.40 | 0.75 | 18 | empty |
Interfaces
2 interfaces between chains.
- A–B · 3037 Ų buried · 42 hydrogen bonds · protein-protein
- A–C · 476 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3PCT · Structure of the class C acid phosphatase from pasteurella multocida · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9VWB2
- Elsewhere: RCSB PDB 3PCT · PDBe 3PCT · UniProt B9VWB2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.