Research workbench
Crystal structure of a TenA homolog (PSPTO1738) from Pseudomonas syringae pv. tomato str. DC3000 at 2.54 A resolution
Analyse Crystal structure of a TenA homolog (PSPTO1738) from Pseudomonas syringae pv.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OQL
- Type
- protein
- Length
- 973 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.54
- Source
- Pseudomonas syringae pv. tomato
- Molecule
- TenA homolog
- UniProt
- Q885U3
- Pockets
- 16 · best druggability 0.81
Structure
x-ray diffraction · resolution 2.54 · 3 distinct chains · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TenA homolog | protein | 243 | 76% helix, 0% strand | Q885U3 |
| B, D | TenA homolog | protein | 244 | 76% helix, 0% strand | Q885U3 |
| C | TenA homolog | protein | 242 | 76% helix, 0% strand | Q885U3 |
Pockets
16 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 723 | 0.81 | 0.85 | 62 | empty |
| 2 | 117 | 0.80 | 0.98 | 25 | empty |
| 3 | 140 | 0.79 | 0.96 | 25 | empty |
| 4 | 124 | 0.79 | 0.97 | 23 | empty |
| 5 | 113 | 0.78 | 0.97 | 23 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1313 Ų buried · 15 hydrogen bonds · protein-protein
- C–D · 1286 Ų buried · 16 hydrogen bonds · protein-protein
- B–D · 819 Ų buried · 15 hydrogen bonds · protein-protein
- A–C · 815 Ų buried · 15 hydrogen bonds · protein-protein
- B–C · 23 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 40 modified (engineered).
Compared structures
- 3OQL · Crystal structure of a tena homolog (PSPTO1738) from pseudomonas syringae pv. tomato str.… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q885U3
- Elsewhere: RCSB PDB 3OQL · PDBe 3OQL · UniProt Q885U3
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